PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0051s0029.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 410aa    MW: 45225.4 Da    PI: 9.825
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0051s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.62.8e-1746134186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +Wt++ v +L+e+++++++ ++ g+l+ ++We+v++ m    + +g +++  qCk+k+enl+kryk ++e +++   e+ s +p+f++l+
  Mapoly0051s0029.1.p  46 EWTDRAVDLLLELYEQKWRGVSFGNLRVKDWEHVASTMderyHWQGERKTFLQCKNKIENLKKRYKLEREKKNDA-GEVMSDWPWFTRLH 134
                          5*************************************666655677889**********************996.88999*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1845136No hitNo description
SuperFamilySSF826573.27E-26318406IPR002634BolA protein
Gene3DG3DSA:3.30.300.901.2E-26321407IPR002634BolA protein
PfamPF017226.5E-27329405IPR002634BolA protein
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAGGGVRVAL PTTPSVTMGG GVLPVGVKET KEGVVVKSEK KKDGNEWTDR AVDLLLELYE  60
QKWRGVSFGN LRVKDWEHVA STMDERYHWQ GERKTFLQCK NKIENLKKRY KLEREKKNDA  120
GEVMSDWPWF TRLHDIIGKA PKQVGLIEDS EGGTLALGLG STVEGPDGEK ECEGEGQGGG  180
LLPQLGIVPI AMRDDSKMRA LTESQISSER ASFMETPPGK DRKQGSTAAC GTRCMQNVPE  240
ISGKSARKRR RNTSVRSPVK DLAASFSNFF NAMAKVEVER MQMLRELISS NTRKRPRISQ  300
APSDNDQCRW CSTSGPSTAP GRNSIHQKLT EALTPTNLEI EDVSVEHAAG LQLGAARTHF  360
NVRVVSTVFE GQSRIQRHRM VYKILQDELK GGVHALSIVA RTPTEAATR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4pui_A3e-233254051095SufE-like protein, chloroplastic
4pui_B3e-233254051095SufE-like protein, chloroplastic
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1163547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.28e-17Trihelix family protein